PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G214100.1
Common NameB456_006G214100, LOC105800285
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 271aa    MW: 29425 Da    PI: 6.2941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G214100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19135185255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Gorai.006G214100.1 135 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 185
                         8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32134193IPR001471AP2/ERF domain
CDDcd000181.40E-31134193No hitNo description
PfamPF008471.1E-13135185IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23135195IPR016177DNA-binding domain
PROSITE profilePS5103224.21135193IPR001471AP2/ERF domain
SMARTSM003801.3E-39135199IPR001471AP2/ERF domain
PRINTSPR003675.3E-11136147IPR001471AP2/ERF domain
PRINTSPR003675.3E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEMYSSANDS DLAMLDSIRQ YLLSDSSDLR LTASTDFTSA PPMFCRSSSF SRLNPCFTET  60
WGDLPLKEDD SEDMLVYGLL RDALTVGWAP SDNSTTNLTP IKPEPQEFLP QTSLEKVDMV  120
AERTVPAVVP AKGKHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTFETAE DAALAYDRAA  180
YRMRGSRALL NFPLRVNSGE PDPVRVTSKR SSPEPSSSSS SGSENASPKR RRKVAGSAPA  240
VVHAGLDMGA GGEVNYKVST CTHGEQVLVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-44131200170ATERF1
2gcc_A2e-44131200170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227233PKRRRKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.21200.0flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5253842e-93HQ525384.1 Gossypium herbaceum clone NBRI_D2_2099 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486765.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803374e-88EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0D2T2390.0A0A0D2T239_G
STRINGPOPTR_0003s07910.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-75ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]